Following are Color Charts for the common colors in the Missouri Foxtrotter Breed.
These Color Charts are designed to use the genes in their hertozygous state, unless stated otherwise. If the horse is actually homozygous the color combinations that can be produced may be completely different.
| Non-Dilute Colors | Cream Dilutes | Champagne Dilutes | Silver Dapple |
| Sorrel/Chestnut | Palomino | Gold | Sorrel (SD Carrier) |
| Bay | Buckskin | Amber | Bay Silver |
| Black | Smoky Black | Classic | Black Silver (Chocolate Silver) |
| Homozygous Black | |||
|
|
|||
| Double Cream Dilutes | Cream + Champagne |
Cream + Silver Dapple |
|
| Cremello | Gold Cream/Ivory | ||
| Perlino | Amber Cream | Buckskin Silver (Yellow Silver) |
|
| Smoky Cream | Classic Cream | Smoky Silver | |